dataframe - reshaping data frame into contingency table in R -


i have series of excel files following contain contingency table :

         cns random h3k       12  682 not_h3k  343  30222

when use 'gdata' library read file using command, gives following table not contingency table anymore:

random <- read.xls ("analysis.xlsx", sheet = 1, header = true)                x    cns   random         1     utr  12    682         2 not_utr 343  30222

i want run fisher test on data, how can reshape data.frame data contingency table format?

read.xls allows arguments read.table. specifically, can specify number of column contains row names. use

random <- read.xls ("analysis.xlsx", sheet = 1, header = true, row.names=1)

and proceed test


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