How to run open-source software on remote Linux server? -


i playing around an open-source software, fsl. have no problems running on mac, able start typing fsl in terminal.

however, have no idea how start software on our school's hpc server. after logging school server via ssh, type fsl usual, , then

if 'fsl' not typo can run following command lookup package contains binary:     command-not-found fsl -bash: fsl: command not found 

then, navigate fsl installation directory (/data/apps/arch/linux_x86_64/fsl/5.0.6) , type fsl. still same error. have tried

module load /data/apps/arch/linux_x86_64/fsl/5.0.6

but error occurs.

utility.c(2360):error:50: cannot open file '' 'reading' utility.c(2360):error:50: cannot open file '' 'reading' ... 

how should load , run it?

you have call executable correct path. may either

  • cd directory containing executable
  • prefix executable's name path ./fsl

or (if intend use executable frequently):

  • add executable's path path-environment variable (export path=$path:/path/to/the/folder/containing/the/executable)
  • use executable's name call (fsl).

or place symlink executable somewhere $path points to:

  • check $path echo ${path} (outputs colon-separated list of directories command line processor call)
  • if there ~/bin in there, place symlink: ln -s /path/to/your/executable/fsl ~/bin/fsl.

the command line processor search directories listed in ${path} executable called somecommand if type somecommand.


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